INFO 2019-11-05 02:12:15,531Z lrauvNc4ToNetcdf.py processResampleNc4File():979 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20191104_20191105/20191104T211435/201911042114_201911042145.nc4 file...
INFO 2019-11-05 02:12:15,532Z lrauvNc4ToNetcdf.py processResampleNc4File():980 After copying to /tmp/201911042114_201911042145.nc4
INFO 2019-11-05 02:12:16,581Z lrauvNc4ToNetcdf.py processResampleNc4File():982 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20191104_20191105/20191104T211435/201911042114_201911042145.nc4
INFO 2019-11-05 02:12:16,600Z lrauvNc4ToNetcdf.py createSeries():225 latitude: v_t values found before 2019-11-04 21:14:00 and after 2019-11-04 21:45:00: [4512 4513 4514 4515]
INFO 2019-11-05 02:12:16,608Z lrauvNc4ToNetcdf.py createSeries():226 Their times:  ['Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:01 2019', 'Mon Nov  4 21:45:01 2019']
INFO 2019-11-05 02:12:16,616Z lrauvNc4ToNetcdf.py createSeries():227 Removing them: [1.5729039e+09 1.5729039e+09 1.5729039e+09 1.5729039e+09] for variable latitude
INFO 2019-11-05 02:12:16,696Z lrauvNc4ToNetcdf.py createSeries():225 longitude: v_t values found before 2019-11-04 21:14:00 and after 2019-11-04 21:45:00: [4512 4513 4514 4515]
INFO 2019-11-05 02:12:16,703Z lrauvNc4ToNetcdf.py createSeries():226 Their times:  ['Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:01 2019', 'Mon Nov  4 21:45:01 2019']
INFO 2019-11-05 02:12:16,711Z lrauvNc4ToNetcdf.py createSeries():227 Removing them: [1.5729039e+09 1.5729039e+09 1.5729039e+09 1.5729039e+09] for variable longitude
INFO 2019-11-05 02:12:16,789Z lrauvNc4ToNetcdf.py createSeries():225 depth: v_t values found before 2019-11-04 21:14:00 and after 2019-11-04 21:45:00: [4512 4513 4514 4515]
INFO 2019-11-05 02:12:16,796Z lrauvNc4ToNetcdf.py createSeries():226 Their times:  ['Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:01 2019', 'Mon Nov  4 21:45:01 2019']
INFO 2019-11-05 02:12:16,804Z lrauvNc4ToNetcdf.py createSeries():227 Removing them: [1.5729039e+09 1.5729039e+09 1.5729039e+09 1.5729039e+09] for variable depth
INFO 2019-11-05 02:12:16,883Z lrauvNc4ToNetcdf.py createSeries():225 time: v_t values found before 2019-11-04 21:14:00 and after 2019-11-04 21:45:00: [4512 4513 4514 4515]
INFO 2019-11-05 02:12:16,891Z lrauvNc4ToNetcdf.py createSeries():226 Their times:  ['Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:01 2019', 'Mon Nov  4 21:45:01 2019']
INFO 2019-11-05 02:12:16,898Z lrauvNc4ToNetcdf.py createSeries():227 Removing them: [1.5729039e+09 1.5729039e+09 1.5729039e+09 1.5729039e+09] for variable time
INFO 2019-11-05 02:12:16,977Z lrauvNc4ToNetcdf.py createSeries():225 latitude: v_t values found before 2019-11-04 21:14:00 and after 2019-11-04 21:45:00: [4512 4513 4514 4515]
INFO 2019-11-05 02:12:16,985Z lrauvNc4ToNetcdf.py createSeries():226 Their times:  ['Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:01 2019', 'Mon Nov  4 21:45:01 2019']
INFO 2019-11-05 02:12:16,992Z lrauvNc4ToNetcdf.py createSeries():227 Removing them: [1.5729039e+09 1.5729039e+09 1.5729039e+09 1.5729039e+09] for variable latitude
INFO 2019-11-05 02:12:17,071Z lrauvNc4ToNetcdf.py createSeries():225 longitude: v_t values found before 2019-11-04 21:14:00 and after 2019-11-04 21:45:00: [4512 4513 4514 4515]
INFO 2019-11-05 02:12:17,078Z lrauvNc4ToNetcdf.py createSeries():226 Their times:  ['Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:01 2019', 'Mon Nov  4 21:45:01 2019']
INFO 2019-11-05 02:12:17,086Z lrauvNc4ToNetcdf.py createSeries():227 Removing them: [1.5729039e+09 1.5729039e+09 1.5729039e+09 1.5729039e+09] for variable longitude
INFO 2019-11-05 02:12:17,165Z lrauvNc4ToNetcdf.py createSeries():225 depth: v_t values found before 2019-11-04 21:14:00 and after 2019-11-04 21:45:00: [4512 4513 4514 4515]
INFO 2019-11-05 02:12:17,172Z lrauvNc4ToNetcdf.py createSeries():226 Their times:  ['Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:01 2019', 'Mon Nov  4 21:45:01 2019']
INFO 2019-11-05 02:12:17,180Z lrauvNc4ToNetcdf.py createSeries():227 Removing them: [1.5729039e+09 1.5729039e+09 1.5729039e+09 1.5729039e+09] for variable depth
INFO 2019-11-05 02:12:17,258Z lrauvNc4ToNetcdf.py createSeries():225 time: v_t values found before 2019-11-04 21:14:00 and after 2019-11-04 21:45:00: [4512 4513 4514 4515]
INFO 2019-11-05 02:12:17,265Z lrauvNc4ToNetcdf.py createSeries():226 Their times:  ['Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:01 2019', 'Mon Nov  4 21:45:01 2019']
INFO 2019-11-05 02:12:17,272Z lrauvNc4ToNetcdf.py createSeries():227 Removing them: [1.5729039e+09 1.5729039e+09 1.5729039e+09 1.5729039e+09] for variable time
INFO 2019-11-05 02:12:17,351Z lrauvNc4ToNetcdf.py createSeries():225 latitude: v_t values found before 2019-11-04 21:14:00 and after 2019-11-04 21:45:00: [4512 4513 4514 4515]
INFO 2019-11-05 02:12:17,359Z lrauvNc4ToNetcdf.py createSeries():226 Their times:  ['Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:01 2019', 'Mon Nov  4 21:45:01 2019']
INFO 2019-11-05 02:12:17,366Z lrauvNc4ToNetcdf.py createSeries():227 Removing them: [1.5729039e+09 1.5729039e+09 1.5729039e+09 1.5729039e+09] for variable latitude
INFO 2019-11-05 02:12:17,444Z lrauvNc4ToNetcdf.py createSeries():225 longitude: v_t values found before 2019-11-04 21:14:00 and after 2019-11-04 21:45:00: [4512 4513 4514 4515]
INFO 2019-11-05 02:12:17,451Z lrauvNc4ToNetcdf.py createSeries():226 Their times:  ['Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:01 2019', 'Mon Nov  4 21:45:01 2019']
INFO 2019-11-05 02:12:17,459Z lrauvNc4ToNetcdf.py createSeries():227 Removing them: [1.5729039e+09 1.5729039e+09 1.5729039e+09 1.5729039e+09] for variable longitude
INFO 2019-11-05 02:12:17,537Z lrauvNc4ToNetcdf.py createSeries():225 depth: v_t values found before 2019-11-04 21:14:00 and after 2019-11-04 21:45:00: [4512 4513 4514 4515]
INFO 2019-11-05 02:12:17,544Z lrauvNc4ToNetcdf.py createSeries():226 Their times:  ['Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:01 2019', 'Mon Nov  4 21:45:01 2019']
INFO 2019-11-05 02:12:17,552Z lrauvNc4ToNetcdf.py createSeries():227 Removing them: [1.5729039e+09 1.5729039e+09 1.5729039e+09 1.5729039e+09] for variable depth
INFO 2019-11-05 02:12:17,629Z lrauvNc4ToNetcdf.py createSeries():225 time: v_t values found before 2019-11-04 21:14:00 and after 2019-11-04 21:45:00: [4512 4513 4514 4515]
INFO 2019-11-05 02:12:17,637Z lrauvNc4ToNetcdf.py createSeries():226 Their times:  ['Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:01 2019', 'Mon Nov  4 21:45:01 2019']
INFO 2019-11-05 02:12:17,644Z lrauvNc4ToNetcdf.py createSeries():227 Removing them: [1.5729039e+09 1.5729039e+09 1.5729039e+09 1.5729039e+09] for variable time
INFO 2019-11-05 02:12:17,722Z lrauvNc4ToNetcdf.py createSeries():225 latitude: v_t values found before 2019-11-04 21:14:00 and after 2019-11-04 21:45:00: [4512 4513 4514 4515]
INFO 2019-11-05 02:12:17,730Z lrauvNc4ToNetcdf.py createSeries():226 Their times:  ['Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:01 2019', 'Mon Nov  4 21:45:01 2019']
INFO 2019-11-05 02:12:17,737Z lrauvNc4ToNetcdf.py createSeries():227 Removing them: [1.5729039e+09 1.5729039e+09 1.5729039e+09 1.5729039e+09] for variable latitude
INFO 2019-11-05 02:12:17,815Z lrauvNc4ToNetcdf.py createSeries():225 longitude: v_t values found before 2019-11-04 21:14:00 and after 2019-11-04 21:45:00: [4512 4513 4514 4515]
INFO 2019-11-05 02:12:17,823Z lrauvNc4ToNetcdf.py createSeries():226 Their times:  ['Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:01 2019', 'Mon Nov  4 21:45:01 2019']
INFO 2019-11-05 02:12:17,830Z lrauvNc4ToNetcdf.py createSeries():227 Removing them: [1.5729039e+09 1.5729039e+09 1.5729039e+09 1.5729039e+09] for variable longitude
INFO 2019-11-05 02:12:17,909Z lrauvNc4ToNetcdf.py createSeries():225 depth: v_t values found before 2019-11-04 21:14:00 and after 2019-11-04 21:45:00: [4512 4513 4514 4515]
INFO 2019-11-05 02:12:17,916Z lrauvNc4ToNetcdf.py createSeries():226 Their times:  ['Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:01 2019', 'Mon Nov  4 21:45:01 2019']
INFO 2019-11-05 02:12:17,923Z lrauvNc4ToNetcdf.py createSeries():227 Removing them: [1.5729039e+09 1.5729039e+09 1.5729039e+09 1.5729039e+09] for variable depth
INFO 2019-11-05 02:12:18,002Z lrauvNc4ToNetcdf.py createSeries():225 time: v_t values found before 2019-11-04 21:14:00 and after 2019-11-04 21:45:00: [4512 4513 4514 4515]
INFO 2019-11-05 02:12:18,009Z lrauvNc4ToNetcdf.py createSeries():226 Their times:  ['Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:01 2019', 'Mon Nov  4 21:45:01 2019']
INFO 2019-11-05 02:12:18,017Z lrauvNc4ToNetcdf.py createSeries():227 Removing them: [1.5729039e+09 1.5729039e+09 1.5729039e+09 1.5729039e+09] for variable time
INFO 2019-11-05 02:12:18,081Z lrauvNc4ToNetcdf.py processResampleNc4File():987 Creating t variable of the time indexes
WARNING 2019-11-05 02:12:18,087Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20191104_20191105/20191104T211435/201911042114_201911042145.nc4
INFO 2019-11-05 02:12:18,089Z lrauvNc4ToNetcdf.py processResampleNc4File():1025 Variable sea_water_salinity empty so skipping
INFO 2019-11-05 02:12:18,092Z lrauvNc4ToNetcdf.py processResampleNc4File():1025 Variable sea_water_temperature empty so skipping
WARNING 2019-11-05 02:12:18,092Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20191104_20191105/20191104T211435/201911042114_201911042145.nc4
WARNING 2019-11-05 02:12:18,092Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20191104_20191105/20191104T211435/201911042114_201911042145.nc4
WARNING 2019-11-05 02:12:18,093Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20191104_20191105/20191104T211435/201911042114_201911042145.nc4
INFO 2019-11-05 02:12:18,095Z lrauvNc4ToNetcdf.py createSeries():225 downwelling_photosynthetic_photon_flux_in_sea_water: v_t values found before 2019-11-04 21:14:00 and after 2019-11-04 21:45:00: [4512 4513 4514 4515]
INFO 2019-11-05 02:12:18,095Z lrauvNc4ToNetcdf.py createSeries():226 Their times:  ['Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:00 2019', 'Mon Nov  4 21:45:01 2019', 'Mon Nov  4 21:45:01 2019']
INFO 2019-11-05 02:12:18,096Z lrauvNc4ToNetcdf.py createSeries():227 Removing them: [1.5729039e+09 1.5729039e+09 1.5729039e+09 1.5729039e+09] for variable downwelling_photosynthetic_photon_flux_in_sea_water
INFO 2019-11-05 02:12:18,155Z lrauvNc4ToNetcdf.py processResampleNc4File():1062 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
WARNING 2019-11-05 02:12:18,155Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20191104_20191105/20191104T211435/201911042114_201911042145.nc4
WARNING 2019-11-05 02:12:18,155Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20191104_20191105/20191104T211435/201911042114_201911042145.nc4
WARNING 2019-11-05 02:12:18,155Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20191104_20191105/20191104T211435/201911042114_201911042145.nc4
INFO 2019-11-05 02:12:18,159Z lrauvNc4ToNetcdf.py processResampleNc4File():1025 Variable concentration_of_chromophoric_dissolved_organic_matter_in_sea_water empty so skipping
INFO 2019-11-05 02:12:18,161Z lrauvNc4ToNetcdf.py processResampleNc4File():1025 Variable mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2019-11-05 02:12:18,164Z lrauvNc4ToNetcdf.py processResampleNc4File():1025 Variable BackscatteringCoeff700nm empty so skipping
INFO 2019-11-05 02:12:18,167Z lrauvNc4ToNetcdf.py processResampleNc4File():1025 Variable VolumeScatCoeff117deg700nm empty so skipping
INFO 2019-11-05 02:12:18,169Z lrauvNc4ToNetcdf.py processResampleNc4File():1025 Variable mass_concentration_of_petroleum_hydrocarbons_in_sea_water empty so skipping
INFO 2019-11-05 02:12:18,170Z lrauvNc4ToNetcdf.py nudge_coords():609 /mbari/LRAUV/whoidhs/missionlogs/2019/20191104_20191105/20191104T211435/201911042114_201911042145.nc4
DEBUG 2019-11-05 02:12:18,260Z lrauvNc4ToNetcdf.py var_series():597 longitude: rad_to_deg = True
DEBUG 2019-11-05 02:12:18,349Z lrauvNc4ToNetcdf.py var_series():597 latitude: rad_to_deg = True
DEBUG 2019-11-05 02:12:18,387Z lrauvNc4ToNetcdf.py var_series():597 longitude_fix: rad_to_deg = False
DEBUG 2019-11-05 02:12:18,423Z lrauvNc4ToNetcdf.py var_series():597 latitude_fix: rad_to_deg = False
INFO 2019-11-05 02:12:18,423Z lrauvNc4ToNetcdf.py nudge_coords():627 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2019-11-05 02:12:18,425Z lrauvNc4ToNetcdf.py nudge_coords():643                  -            -            -       602      4.05              -              -                             -
INFO 2019-11-05 02:12:18,428Z lrauvNc4ToNetcdf.py nudge_coords():665    0:        0.360    0.0002612   -0.0000848       308      2.07          -4.77          -7.60 2019-11-04 21:20:42.980621099
INFO 2019-11-05 02:12:18,434Z lrauvNc4ToNetcdf.py nudge_coords():665    1:        0.337    0.0002175   -0.0001105       261      1.75          -7.33         -11.68 2019-11-04 21:22:28.533298016
INFO 2019-11-05 02:12:18,440Z lrauvNc4ToNetcdf.py nudge_coords():665    2:        0.355    0.0010624    0.0003725      3051     20.56           2.11           3.36 2019-11-04 21:43:02.734036922
INFO 2019-11-05 02:12:18,447Z lrauvNc4ToNetcdf.py nudge_coords():695    4:            -            -            -       294      1.97              -              -
INFO 2019-11-05 02:12:18,447Z lrauvNc4ToNetcdf.py nudge_coords():699 Points in final series = 4516
DEBUG 2019-11-05 02:12:18,448Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():525 Constructing trackingdb url to 3600 seconds beyond time range of file
INFO 2019-11-05 02:12:18,464Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():533 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20191104T201435/20191104T224501/data.csv
INFO 2019-11-05 02:12:18,507Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():556 Found 0 position values from the Tracking database
INFO 2019-11-05 02:12:18,510Z lrauvNc4ToNetcdf.py processResampleNc4File():1120 ['PAR', 'latitude', 'longitude', 'depth', 'time']
DEBUG 2019-11-05 02:12:18,511Z lrauvNc4ToNetcdf.py write_netcdf():120 Creating netCDF file /mbari/LRAUV/whoidhs/missionlogs/2019/20191104_20191105/20191104T211435/201911042114_201911042145_10S_sci.nc
DEBUG 2019-11-05 02:12:18,516Z lrauvNc4ToNetcdf.py write_netcdf():144 Adding in record variable time
DEBUG 2019-11-05 02:12:18,532Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable PAR
DEBUG 2019-11-05 02:12:18,543Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable latitude
DEBUG 2019-11-05 02:12:18,553Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable longitude
DEBUG 2019-11-05 02:12:18,565Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable depth
DEBUG 2019-11-05 02:12:18,575Z lrauvNc4ToNetcdf.py write_netcdf():163 Adding in global metadata
INFO 2019-11-05 02:12:18,774Z lrauvNc4ToNetcdf.py processResampleNc4File():1123 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20191104_20191105/20191104T211435/201911042114_201911042145_10S_sci.nc