INFO 2020-02-11 01:44:57,315Z lrauvNc4ToNetcdf.py processResampleNc4File():979 Reading /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 file... INFO 2020-02-11 01:44:57,316Z lrauvNc4ToNetcdf.py processResampleNc4File():980 After copying to /tmp/202002051515_202002051602.nc4 INFO 2020-02-11 01:44:58,481Z lrauvNc4ToNetcdf.py processResampleNc4File():982 Read file /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 INFO 2020-02-11 01:45:00,970Z lrauvNc4ToNetcdf.py processResampleNc4File():987 Creating t variable of the time indexes WARNING 2020-02-11 01:45:00,976Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 WARNING 2020-02-11 01:45:00,976Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 WARNING 2020-02-11 01:45:00,977Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 WARNING 2020-02-11 01:45:00,977Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 WARNING 2020-02-11 01:45:00,977Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 WARNING 2020-02-11 01:45:00,977Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 INFO 2020-02-11 01:45:01,125Z lrauvNc4ToNetcdf.py processResampleNc4File():1062 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR WARNING 2020-02-11 01:45:01,125Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 WARNING 2020-02-11 01:45:01,125Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 WARNING 2020-02-11 01:45:01,125Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 INFO 2020-02-11 01:45:01,177Z lrauvNc4ToNetcdf.py processResampleNc4File():1062 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter INFO 2020-02-11 01:45:01,227Z lrauvNc4ToNetcdf.py processResampleNc4File():1062 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2020-02-11 01:45:01,230Z lrauvNc4ToNetcdf.py processResampleNc4File():1025 Variable BackscatteringCoeff700nm empty so skipping INFO 2020-02-11 01:45:01,279Z lrauvNc4ToNetcdf.py processResampleNc4File():1062 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm INFO 2020-02-11 01:45:01,328Z lrauvNc4ToNetcdf.py processResampleNc4File():1062 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons INFO 2020-02-11 01:45:01,329Z lrauvNc4ToNetcdf.py nudge_coords():609 /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 DEBUG 2020-02-11 01:45:01,446Z lrauvNc4ToNetcdf.py var_series():597 longitude: rad_to_deg = True DEBUG 2020-02-11 01:45:01,563Z lrauvNc4ToNetcdf.py var_series():597 latitude: rad_to_deg = True DEBUG 2020-02-11 01:45:01,598Z lrauvNc4ToNetcdf.py var_series():597 longitude_fix: rad_to_deg = False DEBUG 2020-02-11 01:45:01,633Z lrauvNc4ToNetcdf.py var_series():597 latitude_fix: rad_to_deg = False INFO 2020-02-11 01:45:01,633Z lrauvNc4ToNetcdf.py nudge_coords():627 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2020-02-11 01:45:01,634Z lrauvNc4ToNetcdf.py nudge_coords():643 - - - 0 0.00 - - - INFO 2020-02-11 01:45:01,637Z lrauvNc4ToNetcdf.py nudge_coords():665 0: 0.339 -0.0000046 -0.0000374 288 1.93 2.72 -3.58 2020-02-05 15:18:53.652651072 INFO 2020-02-11 01:45:01,644Z lrauvNc4ToNetcdf.py nudge_coords():665 1: 0.357 0.0000040 -0.0000007 150 1.00 0.10 -0.14 2020-02-05 15:19:54.250298976 INFO 2020-02-11 01:45:01,650Z lrauvNc4ToNetcdf.py nudge_coords():665 2: 0.336 -0.0000108 -0.0000093 450 3.02 0.43 -0.57 2020-02-05 15:22:56.116451025 INFO 2020-02-11 01:45:01,656Z lrauvNc4ToNetcdf.py nudge_coords():665 3: 0.360 0.0001317 0.0000145 3400 22.90 -0.09 0.12 2020-02-05 15:45:50.269260883 INFO 2020-02-11 01:45:01,664Z lrauvNc4ToNetcdf.py nudge_coords():665 4: 0.368 0.0000974 0.0000644 307 2.06 -4.37 5.79 2020-02-05 15:47:54.301222086 INFO 2020-02-11 01:45:01,671Z lrauvNc4ToNetcdf.py nudge_coords():665 5: 0.366 -0.0000257 0.0000243 1270 8.55 -0.40 0.53 2020-02-05 15:56:27.548984051 INFO 2020-02-11 01:45:01,677Z lrauvNc4ToNetcdf.py nudge_coords():695 7: - - - 821 5.52 - - INFO 2020-02-11 01:45:01,677Z lrauvNc4ToNetcdf.py nudge_coords():699 Points in final series = 6686 DEBUG 2020-02-11 01:45:01,679Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():525 Constructing trackingdb url to 3600 seconds beyond time range of file INFO 2020-02-11 01:45:01,698Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():533 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20200205T141504/20200205T170159/data.csv INFO 2020-02-11 01:45:01,722Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():556 Found 0 position values from the Tracking database INFO 2020-02-11 01:45:01,730Z lrauvNc4ToNetcdf.py processResampleNc4File():1120 ['PAR', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'latitude', 'longitude', 'depth', 'time'] DEBUG 2020-02-11 01:45:01,731Z lrauvNc4ToNetcdf.py write_netcdf():120 Creating netCDF file /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602_10S_sci.nc DEBUG 2020-02-11 01:45:01,735Z lrauvNc4ToNetcdf.py write_netcdf():144 Adding in record variable time DEBUG 2020-02-11 01:45:01,753Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable PAR DEBUG 2020-02-11 01:45:01,757Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chromophoric_dissolved_organic_matter DEBUG 2020-02-11 01:45:01,761Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chlorophyll DEBUG 2020-02-11 01:45:01,765Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable VolumeScatCoeff117deg700nm DEBUG 2020-02-11 01:45:01,768Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable petroleum_hydrocarbons DEBUG 2020-02-11 01:45:01,772Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable latitude DEBUG 2020-02-11 01:45:01,775Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable longitude DEBUG 2020-02-11 01:45:01,778Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable depth DEBUG 2020-02-11 01:45:01,788Z lrauvNc4ToNetcdf.py write_netcdf():163 Adding in global metadata INFO 2020-02-11 01:45:01,910Z lrauvNc4ToNetcdf.py processResampleNc4File():1123 Wrote /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602_10S_sci.nc