INFO 2020-02-11 01:41:10,912Z lrauvNc4ToNetcdf.py processResampleNc4File():979 Reading /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 file... INFO 2020-02-11 01:41:10,912Z lrauvNc4ToNetcdf.py processResampleNc4File():980 After copying to /tmp/202002051515_202002051602.nc4 INFO 2020-02-11 01:41:12,047Z lrauvNc4ToNetcdf.py processResampleNc4File():982 Read file /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 INFO 2020-02-11 01:41:14,651Z lrauvNc4ToNetcdf.py processResampleNc4File():987 Creating t variable of the time indexes INFO 2020-02-11 01:41:14,665Z lrauvNc4ToNetcdf.py processResampleNc4File():1062 Found in group NAL9602 parameter time_fix renaming to fix_time INFO 2020-02-11 01:41:14,672Z lrauvNc4ToNetcdf.py processResampleNc4File():1062 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude INFO 2020-02-11 01:41:14,678Z lrauvNc4ToNetcdf.py processResampleNc4File():1062 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude WARNING 2020-02-11 01:41:14,678Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 INFO 2020-02-11 01:41:14,700Z lrauvNc4ToNetcdf.py processResampleNc4File():1062 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position WARNING 2020-02-11 01:41:14,700Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 WARNING 2020-02-11 01:41:14,701Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 WARNING 2020-02-11 01:41:14,701Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 WARNING 2020-02-11 01:41:14,701Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 INFO 2020-02-11 01:41:14,737Z lrauvNc4ToNetcdf.py processResampleNc4File():1062 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle WARNING 2020-02-11 01:41:14,737Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 INFO 2020-02-11 01:41:14,748Z lrauvNc4ToNetcdf.py processResampleNc4File():1062 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position INFO 2020-02-11 01:41:14,896Z lrauvNc4ToNetcdf.py processResampleNc4File():1062 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR INFO 2020-02-11 01:41:14,914Z lrauvNc4ToNetcdf.py processResampleNc4File():1062 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle INFO 2020-02-11 01:41:15,008Z lrauvNc4ToNetcdf.py processResampleNc4File():1062 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate WARNING 2020-02-11 01:41:15,009Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 WARNING 2020-02-11 01:41:15,009Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 WARNING 2020-02-11 01:41:15,009Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 INFO 2020-02-11 01:41:15,057Z lrauvNc4ToNetcdf.py processResampleNc4File():1062 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter INFO 2020-02-11 01:41:15,105Z lrauvNc4ToNetcdf.py processResampleNc4File():1062 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2020-02-11 01:41:15,108Z lrauvNc4ToNetcdf.py processResampleNc4File():1025 Variable BackscatteringCoeff700nm empty so skipping INFO 2020-02-11 01:41:15,155Z lrauvNc4ToNetcdf.py processResampleNc4File():1062 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm INFO 2020-02-11 01:41:15,203Z lrauvNc4ToNetcdf.py processResampleNc4File():1062 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons INFO 2020-02-11 01:41:15,209Z lrauvNc4ToNetcdf.py processResampleNc4File():1062 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources INFO 2020-02-11 01:41:15,348Z lrauvNc4ToNetcdf.py processResampleNc4File():1062 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources INFO 2020-02-11 01:41:15,488Z lrauvNc4ToNetcdf.py processResampleNc4File():1062 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources INFO 2020-02-11 01:41:15,626Z lrauvNc4ToNetcdf.py processResampleNc4File():1062 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources WARNING 2020-02-11 01:41:15,626Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 WARNING 2020-02-11 01:41:15,627Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 WARNING 2020-02-11 01:41:15,627Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 WARNING 2020-02-11 01:41:15,627Z lrauvNc4ToNetcdf.py processResampleNc4File():1064 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 INFO 2020-02-11 01:41:15,638Z lrauvNc4ToNetcdf.py processResampleNc4File():1062 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge INFO 2020-02-11 01:41:15,647Z lrauvNc4ToNetcdf.py processResampleNc4File():1062 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage INFO 2020-02-11 01:41:15,654Z lrauvNc4ToNetcdf.py processResampleNc4File():1062 Found in group Onboard parameter platform_average_current renaming to health_platform_average_current DEBUG 2020-02-11 01:41:15,825Z lrauvNc4ToNetcdf.py createNav():477 calling ts.resample() for pitch DEBUG 2020-02-11 01:41:15,830Z lrauvNc4ToNetcdf.py createNav():479 calling self.interpolate() for pitch INFO 2020-02-11 01:41:15,831Z lrauvNc4ToNetcdf.py createNav():489 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'} DEBUG 2020-02-11 01:41:16,003Z lrauvNc4ToNetcdf.py createNav():477 calling ts.resample() for roll DEBUG 2020-02-11 01:41:16,008Z lrauvNc4ToNetcdf.py createNav():479 calling self.interpolate() for roll INFO 2020-02-11 01:41:16,009Z lrauvNc4ToNetcdf.py createNav():489 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'} DEBUG 2020-02-11 01:41:16,175Z lrauvNc4ToNetcdf.py createNav():477 calling ts.resample() for yaw DEBUG 2020-02-11 01:41:16,179Z lrauvNc4ToNetcdf.py createNav():479 calling self.interpolate() for yaw INFO 2020-02-11 01:41:16,180Z lrauvNc4ToNetcdf.py createNav():489 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'} INFO 2020-02-11 01:41:16,181Z lrauvNc4ToNetcdf.py nudge_coords():609 /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602.nc4 DEBUG 2020-02-11 01:41:16,297Z lrauvNc4ToNetcdf.py var_series():597 longitude: rad_to_deg = True DEBUG 2020-02-11 01:41:16,411Z lrauvNc4ToNetcdf.py var_series():597 latitude: rad_to_deg = True DEBUG 2020-02-11 01:41:16,447Z lrauvNc4ToNetcdf.py var_series():597 longitude_fix: rad_to_deg = False DEBUG 2020-02-11 01:41:16,482Z lrauvNc4ToNetcdf.py var_series():597 latitude_fix: rad_to_deg = False INFO 2020-02-11 01:41:16,482Z lrauvNc4ToNetcdf.py nudge_coords():627 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2020-02-11 01:41:16,484Z lrauvNc4ToNetcdf.py nudge_coords():643 - - - 0 0.00 - - - INFO 2020-02-11 01:41:16,486Z lrauvNc4ToNetcdf.py nudge_coords():665 0: 0.339 -0.0000046 -0.0000374 288 1.93 2.72 -3.58 2020-02-05 15:18:53.652651072 INFO 2020-02-11 01:41:16,493Z lrauvNc4ToNetcdf.py nudge_coords():665 1: 0.357 0.0000040 -0.0000007 150 1.00 0.10 -0.14 2020-02-05 15:19:54.250298976 INFO 2020-02-11 01:41:16,499Z lrauvNc4ToNetcdf.py nudge_coords():665 2: 0.336 -0.0000108 -0.0000093 450 3.02 0.43 -0.57 2020-02-05 15:22:56.116451025 INFO 2020-02-11 01:41:16,505Z lrauvNc4ToNetcdf.py nudge_coords():665 3: 0.360 0.0001317 0.0000145 3400 22.90 -0.09 0.12 2020-02-05 15:45:50.269260883 INFO 2020-02-11 01:41:16,512Z lrauvNc4ToNetcdf.py nudge_coords():665 4: 0.368 0.0000974 0.0000644 307 2.06 -4.37 5.79 2020-02-05 15:47:54.301222086 INFO 2020-02-11 01:41:16,518Z lrauvNc4ToNetcdf.py nudge_coords():665 5: 0.366 -0.0000257 0.0000243 1270 8.55 -0.40 0.53 2020-02-05 15:56:27.548984051 INFO 2020-02-11 01:41:16,524Z lrauvNc4ToNetcdf.py nudge_coords():695 7: - - - 821 5.52 - - INFO 2020-02-11 01:41:16,524Z lrauvNc4ToNetcdf.py nudge_coords():699 Points in final series = 6686 DEBUG 2020-02-11 01:41:16,527Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():525 Constructing trackingdb url to 3600 seconds beyond time range of file INFO 2020-02-11 01:41:16,546Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():533 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20200205T141504/20200205T170159/data.csv INFO 2020-02-11 01:41:16,587Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():556 Found 0 position values from the Tracking database INFO 2020-02-11 01:41:16,591Z lrauvNc4ToNetcdf.py processResampleNc4File():1120 ['fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'PAR', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'health_platform_average_current', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time'] DEBUG 2020-02-11 01:41:16,593Z lrauvNc4ToNetcdf.py write_netcdf():120 Creating netCDF file /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602_2S_scieng.nc DEBUG 2020-02-11 01:41:16,597Z lrauvNc4ToNetcdf.py write_netcdf():144 Adding in record variable fix_time DEBUG 2020-02-11 01:41:16,620Z lrauvNc4ToNetcdf.py write_netcdf():144 Adding in record variable time DEBUG 2020-02-11 01:41:16,628Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable fix_latitude DEBUG 2020-02-11 01:41:16,636Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable fix_longitude DEBUG 2020-02-11 01:41:16,644Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_buoyancy_position DEBUG 2020-02-11 01:41:16,651Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_elevator_angle DEBUG 2020-02-11 01:41:16,658Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_mass_position DEBUG 2020-02-11 01:41:16,666Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable PAR DEBUG 2020-02-11 01:41:16,673Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_rudder_angle DEBUG 2020-02-11 01:41:16,686Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_propeller_rotation_rate DEBUG 2020-02-11 01:41:16,693Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chromophoric_dissolved_organic_matter DEBUG 2020-02-11 01:41:16,700Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chlorophyll DEBUG 2020-02-11 01:41:16,708Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable VolumeScatCoeff117deg700nm DEBUG 2020-02-11 01:41:16,721Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable petroleum_hydrocarbons DEBUG 2020-02-11 01:41:16,729Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources DEBUG 2020-02-11 01:41:16,736Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable pose_longitude_DeadReckonUsingMultipleVelocitySources DEBUG 2020-02-11 01:41:16,744Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable pose_latitude_DeadReckonUsingMultipleVelocitySources DEBUG 2020-02-11 01:41:16,751Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable pose_depth_DeadReckonUsingMultipleVelocitySources DEBUG 2020-02-11 01:41:16,758Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable health_platform_battery_charge DEBUG 2020-02-11 01:41:16,765Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable health_platform_average_voltage DEBUG 2020-02-11 01:41:16,779Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable health_platform_average_current DEBUG 2020-02-11 01:41:16,787Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable pitch DEBUG 2020-02-11 01:41:16,794Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable roll DEBUG 2020-02-11 01:41:16,801Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable yaw DEBUG 2020-02-11 01:41:16,808Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable latitude DEBUG 2020-02-11 01:41:16,815Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable longitude DEBUG 2020-02-11 01:41:16,823Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable depth DEBUG 2020-02-11 01:41:16,830Z lrauvNc4ToNetcdf.py write_netcdf():163 Adding in global metadata INFO 2020-02-11 01:41:17,011Z lrauvNc4ToNetcdf.py processResampleNc4File():1123 Wrote /mbari/LRAUV/whoidhs/missionlogs/2020/20200204_20200206/20200205T151453/202002051515_202002051602_2S_scieng.nc